SRX099381
GSM803109: input wildtype 1and2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CD4 CD8 double positive cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse wt DP thymocytes
genetic background
C57BL/6
genotype
wt
cell type
DP thymocytes
chip antibody
none

Sequenced DNA Library

library_name
GSM803109: input wildtype 1and2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
12496794
Reads aligned (%)
95.3
Duplicates removed (%)
8.3
Number of peaks
521 (qval < 1E-05)

mm9

Number of total reads
12496794
Reads aligned (%)
95.1
Duplicates removed (%)
8.5
Number of peaks
593 (qval < 1E-05)

Base call quality data from DBCLS SRA