SRX099378
GSM803106: Aio Ikaros knockout chromatin

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ikzf3

Cell type

Cell type Class
Blood
Cell type
CD4 CD8 double positive cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse Ik knockout DP thymocytes
genetic background
C57BL/6 x129S4/SvJae
genotype
Ikaros knockout
cell type
DP thymocytes
chip antibody
homemade Aiolos

Sequenced DNA Library

library_name
GSM803106: Aio Ikaros knockout chromatin
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
6827528
Reads aligned (%)
82.8
Duplicates removed (%)
8.8
Number of peaks
1432 (qval < 1E-05)

mm9

Number of total reads
6827528
Reads aligned (%)
82.5
Duplicates removed (%)
9.2
Number of peaks
1453 (qval < 1E-05)

Base call quality data from DBCLS SRA