SRX099262
GSM801545: input stim 3T3; Mus musculus; other

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Others
Cell type
3T3 fibroblasts
NA
NA

Attributes by original data submitter

Sample

source_name
input_stim_3T3
cell type
3T3 fibroblasts
chip antibody
none

Sequenced DNA Library

library_name
GSM801545: input_stim_3T3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
42456281
Reads aligned (%)
75.1
Duplicates removed (%)
14.9
Number of peaks
1064 (qval < 1E-05)

mm9

Number of total reads
42456281
Reads aligned (%)
74.9
Duplicates removed (%)
15.0
Number of peaks
1159 (qval < 1E-05)

Base call quality data from DBCLS SRA