Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Kdm4a

Cell type

Cell type Class
Blood
Cell type
Dendritic Cells
MeSH Description
ANTIGEN-PRESENTING CELLS of dendritic cell morphology found in the LYMPH NODES and other lymphoid tissues.

Attributes by original data submitter

Sample

source_name
JmjD2_34_stim_DC
cell type
dendritic cells
chip antibody
anti-JmjD2-family (clone 34)

Sequenced DNA Library

library_name
GSM801529: JmjD2_34_stim_DC
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
38321438
Reads aligned (%)
74.0
Duplicates removed (%)
18.3
Number of peaks
778 (qval < 1E-05)

mm9

Number of total reads
38321438
Reads aligned (%)
73.8
Duplicates removed (%)
18.4
Number of peaks
912 (qval < 1E-05)

Base call quality data from DBCLS SRA