SRX099182
GSM801011: VCaP AR DHT 4h

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AR

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
prostate cancer Cells
treatment
DHT for 4h
passages
14-17
chip antibody
AR
chip antibody manufacturer
Santa Crus
cell line
VCaP

Sequenced DNA Library

library_name
GSM801011: VCaP AR DHT 4h
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
17761715
Reads aligned (%)
93.8
Duplicates removed (%)
45.0
Number of peaks
27972 (qval < 1E-05)

hg19

Number of total reads
17761715
Reads aligned (%)
93.2
Duplicates removed (%)
45.8
Number of peaks
27915 (qval < 1E-05)

Base call quality data from DBCLS SRA