SRX097685
GSM798326: Yale ChipSeq CH12 Input IgG-Yale

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CH12
Tissue
Blood
Lineage
cellLine
Description
B-cell lymphoma (GM12878 analog)

Attributes by original data submitter

Sample

source_name
CH12
biomaterial_provider
Weissman lab
lab
Yale-m
lab description
Weissman - Yale University
datatype
ChipSeq
datatype description
ChIP-Seq
cell
CH12
cell organism
mouse
cell description
B-cell lymphoma (GM12878 analog)
cell sex
F
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment
None
treatment description
No special treatment or protocol applies
control
IgG-Yale
control description
Input signal from Mouse IgG ChIP-seq prepared at Yale
age
immortalized
age description
Immortal cells
control
IgG-Yale
control description
Input signal from Mouse IgG ChIP-seq prepared at Yale
controlid
CH12/None/Input/IgG-Yale
replicate
1
replicate description
tier 1
strain
B10.H-2aH-4bp/Wts
strain description
Derived by inbreeding from selected F2 progeny of B10.A X B10.129

Sequenced DNA Library

library_name
GSM798326: Yale_ChipSeq_CH12_Input_IgG-Yale
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
57128420
Reads aligned (%)
63.7
Duplicates removed (%)
10.0
Number of peaks
569 (qval < 1E-05)

mm9

Number of total reads
57128420
Reads aligned (%)
63.5
Duplicates removed (%)
10.0
Number of peaks
681 (qval < 1E-05)

Base call quality data from DBCLS SRA