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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Ice1
wikigenes
PDBj
CellType: S2
ATCC
MeSH
RIKEN BRC
SRX097616
GSM796329: Ice1 ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Ice1
Cell type
Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage
Attributes by original data submitter
Sample
source_name
Schneider's Drosophila Line 2
cell type
S2; Schneider's Drosophila Line 2; Marco Blanchette's Lab
cell line
S2
antibody
in house Rabbit anti-Ice1 (CG13550, aa 1-192)
Sequenced DNA Library
library_name
GSM796329: Ice1 ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
30067888
Reads aligned (%)
88.5
Duplicates removed (%)
63.0
Number of peaks
5685 (qval < 1E-05)
dm3
Number of total reads
30067888
Reads aligned (%)
88.7
Duplicates removed (%)
60.2
Number of peaks
6909 (qval < 1E-05)
Base call quality data from
DBCLS SRA