Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
H9 hESCs
chip antibody
None
cell type
H9 hESCs

Sequenced DNA Library

library_name
GSM768312: WCE_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
116288086
Reads aligned (%)
93.5
Duplicates removed (%)
5.8
Number of peaks
3557 (qval < 1E-05)

hg19

Number of total reads
116288086
Reads aligned (%)
92.9
Duplicates removed (%)
7.4
Number of peaks
2685 (qval < 1E-05)

Base call quality data from DBCLS SRA