Toggle navigation
ChIP-Atlas
Peak Browser
Target Genes
Colocalization
Enrichment Analysis
Publications
Docs
Advanced
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Orc2
wikigenes
PDBj
CellType: Salivary glands
ATCC
MeSH
RIKEN BRC
SRX097296
GSM790737: SuUR 3SG orc2 ChIP
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Orc2
Cell type
Cell type Class
Larvae
Cell type
Salivary glands
NA
NA
Attributes by original data submitter
Sample
source_name
third instar salivary gland from SuUR
genotype
SuUR
antibody
orc2 (steve bell lab, MIT)
tissue
third instar salivary gland
Sequenced DNA Library
library_name
GSM790737: SuUR_3SG_orc2_ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
dm3
Number of total reads
22573162
Reads aligned (%)
42.5
Duplicates removed (%)
42.1
Number of peaks
7146 (qval < 1E-05)
dm6
Number of total reads
22573162
Reads aligned (%)
42.3
Duplicates removed (%)
42.2
Number of peaks
7142 (qval < 1E-05)
Base call quality data from
DBCLS SRA