SRX097111
GSM788370: H3K4me1 ChIP-seq K562 BIO

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
H3K4me1_K562
cell line
K562
chip antibody
H3K4me1
chip antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM788370: H3K4me1 ChIP-seq K562 BIO
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
36166736
Reads aligned (%)
37.9
Duplicates removed (%)
28.5
Number of peaks
1964 (qval < 1E-05)

hg19

Number of total reads
36166736
Reads aligned (%)
37.6
Duplicates removed (%)
29.1
Number of peaks
2041 (qval < 1E-05)

Base call quality data from DBCLS SRA