SRX097109
GSM788368: GATA2 ChIP-seq K562

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA2

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
cell line
K562
chip antibody
GATA2
chip antibody vendor
Santa Cruz
cell type
K562

Sequenced DNA Library

library_name
GSM788368: GATA2 ChIP-seq K562
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20595142
Reads aligned (%)
94.4
Duplicates removed (%)
39.8
Number of peaks
290 (qval < 1E-05)

hg19

Number of total reads
20595142
Reads aligned (%)
94.2
Duplicates removed (%)
40.2
Number of peaks
301 (qval < 1E-05)

Base call quality data from DBCLS SRA