SRX097108
GSM788367: GATA1 ChIP-seq K562

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
cell line
K562
chip antibody
GATA1
chip antibody vendor
Santa Cruz
cell type
K562

Sequenced DNA Library

library_name
GSM788367: GATA1 ChIP-seq K562
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18955283
Reads aligned (%)
93.4
Duplicates removed (%)
47.4
Number of peaks
23147 (qval < 1E-05)

hg19

Number of total reads
18955283
Reads aligned (%)
92.9
Duplicates removed (%)
48.3
Number of peaks
23027 (qval < 1E-05)

Base call quality data from DBCLS SRA