SRX097105
GSM788364: CEBPA ChIP-Seq K562-C/EBPA bmp4

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CEBPA

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562-C/EBPA
cell line
K562-C/EBPA
chip antibody
CEBPA
chip antibody vendor
Santa Cruz
cell type
K562-C/EBPA

Sequenced DNA Library

library_name
GSM788364: CEBPA ChIP-Seq K562-C/EBPA bmp4
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25421125
Reads aligned (%)
71.7
Duplicates removed (%)
46.4
Number of peaks
6467 (qval < 1E-05)

hg19

Number of total reads
25421125
Reads aligned (%)
71.1
Duplicates removed (%)
47.5
Number of peaks
6531 (qval < 1E-05)

Base call quality data from DBCLS SRA