Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMAD1

Cell type

Cell type Class
Blood
Cell type
U-937
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma Diffuse Large B Cell

Attributes by original data submitter

Sample

source_name
SMAD1 ChIP-Seq U937 BMP4
cell line
U937
chip antibody
SMAD1
antibody catalog number
Santa Cruz SC-6031

Sequenced DNA Library

library_name
GSM722425: SMAD1_U937bmp4_r1_100608_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
21445873
Reads aligned (%)
51.6
Duplicates removed (%)
26.7
Number of peaks
36218 (qval < 1E-05)

hg38

Number of total reads
21445873
Reads aligned (%)
52.4
Duplicates removed (%)
26.1
Number of peaks
36248 (qval < 1E-05)

Base call quality data from DBCLS SRA