SRX097096
GSM722424: CEBPA U937dmso r1 100505 5

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CEBPA

Cell type

Cell type Class
Blood
Cell type
U-937
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma Diffuse Large B Cell

Attributes by original data submitter

Sample

source_name
CEBPA ChIP-Seq U937 DMSO
cell line
U937
chip antibody
CEBPA
antibody catalog number
Santa Cruz SC-9314

Sequenced DNA Library

library_name
GSM722424: CEBPA_U937dmso_r1_100505_5
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
16539901
Reads aligned (%)
54.6
Duplicates removed (%)
51.3
Number of peaks
27170 (qval < 1E-05)

hg38

Number of total reads
16539901
Reads aligned (%)
54.9
Duplicates removed (%)
50.5
Number of peaks
27232 (qval < 1E-05)

Base call quality data from DBCLS SRA