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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CEBPA
wikigenes
PDBj
CellType: U-937
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX097096
GSM722424: CEBPA U937dmso r1 100505 5
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CEBPA
Cell type
Cell type Class
Blood
Cell type
U-937
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma Diffuse Large B Cell
Attributes by original data submitter
Sample
source_name
CEBPA ChIP-Seq U937 DMSO
cell line
U937
chip antibody
CEBPA
antibody catalog number
Santa Cruz SC-9314
Sequenced DNA Library
library_name
GSM722424: CEBPA_U937dmso_r1_100505_5
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
16539901
Reads aligned (%)
54.9
Duplicates removed (%)
50.5
Number of peaks
27232 (qval < 1E-05)
hg19
Number of total reads
16539901
Reads aligned (%)
54.6
Duplicates removed (%)
51.3
Number of peaks
27170 (qval < 1E-05)
Base call quality data from
DBCLS SRA