SRX097090
GSM722417: SMAD1 K562campk r1 110323 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMAD1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
SMAD1 ChIP-Seq K562 dorso
cell line
K562
chip antibody
SMAD1
antibody catalog number
Santa Cruz SC-7965

Sequenced DNA Library

library_name
GSM722417: SMAD1_K562campk_r1_110323_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
25613138
Reads aligned (%)
70.4
Duplicates removed (%)
13.3
Number of peaks
1015 (qval < 1E-05)

hg38

Number of total reads
25613138
Reads aligned (%)
71.0
Duplicates removed (%)
12.2
Number of peaks
1113 (qval < 1E-05)

Base call quality data from DBCLS SRA