SRX097089
GSM722416: SMAD1 K562bmp4 r1 100608 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMAD1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
SMAD1 ChIP-Seq K562 bmp4
cell line
K562
chip antibody
SMAD1
antibody catalog number
Santa Cruz SC-7965

Sequenced DNA Library

library_name
GSM722416: SMAD1_K562bmp4_r1_100608_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20782460
Reads aligned (%)
82.5
Duplicates removed (%)
18.7
Number of peaks
20574 (qval < 1E-05)

hg19

Number of total reads
20782460
Reads aligned (%)
82.1
Duplicates removed (%)
19.3
Number of peaks
20589 (qval < 1E-05)

Base call quality data from DBCLS SRA