SRX097087
GSM722414: GATA2 K562bio r1 110325 5

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA2

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
GATA2 ChIP-seq K562 BIO
cell line
K562
chip antibody
GATA2
antibody catalog number
Santa Cruz SC-9008

Sequenced DNA Library

library_name
GSM722414: GATA2_K562bio_r1_110325_5
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29814767
Reads aligned (%)
81.4
Duplicates removed (%)
63.6
Number of peaks
7705 (qval < 1E-05)

hg19

Number of total reads
29814767
Reads aligned (%)
80.8
Duplicates removed (%)
64.8
Number of peaks
7726 (qval < 1E-05)

Base call quality data from DBCLS SRA