SRX097086
GSM722413: GATA1 K562bmp r1 110325 4

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
GATA1 ChIP-seq K562 BMP
cell line
K562
chip antibody
GATA1
antibody catalog number
Santa Cruz SC-265

Sequenced DNA Library

library_name
GSM722413: GATA1_K562bmp_r1_110325_4
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29871765
Reads aligned (%)
87.8
Duplicates removed (%)
25.9
Number of peaks
14382 (qval < 1E-05)

hg19

Number of total reads
29871765
Reads aligned (%)
87.2
Duplicates removed (%)
26.8
Number of peaks
14471 (qval < 1E-05)

Base call quality data from DBCLS SRA