Toggle navigation
ChIP-Atlas
Peak Browser
Target Genes
Colocalization
Enrichment Analysis
Publications
Docs
Advanced
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: SMAD1
wikigenes
PDBj
CellType: CD34 Hematopoietic stem cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX097073
GSM722400: SMAD1 CD34prog bmp r2 101105 3
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
SMAD1
Cell type
Cell type Class
Blood
Cell type
CD34 Hematopoietic stem cells
NA
NA
Attributes by original data submitter
Sample
source_name
SMAD1 ChIP-seq CD34+ progenitors BMP
cell type
Hematopoietic Stem & Progenitor Cells
chip antibody
SMAD1
antibody catalog number
Santa Cruz SC-7965
Sequenced DNA Library
library_name
GSM722400: SMAD1_CD34prog_bmp_r2_101105_3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
29057790
Reads aligned (%)
51.7
Duplicates removed (%)
22.7
Number of peaks
10526 (qval < 1E-05)
hg38
Number of total reads
29057790
Reads aligned (%)
52.5
Duplicates removed (%)
22.1
Number of peaks
10415 (qval < 1E-05)
Base call quality data from
DBCLS SRA