SRX097073
GSM722400: SMAD1 CD34prog bmp r2 101105 3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMAD1

Cell type

Cell type Class
Blood
Cell type
CD34 Hematopoietic stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
SMAD1 ChIP-seq CD34+ progenitors BMP
cell type
Hematopoietic Stem & Progenitor Cells
chip antibody
SMAD1
antibody catalog number
Santa Cruz SC-7965

Sequenced DNA Library

library_name
GSM722400: SMAD1_CD34prog_bmp_r2_101105_3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
29057790
Reads aligned (%)
51.7
Duplicates removed (%)
22.7
Number of peaks
10526 (qval < 1E-05)

hg38

Number of total reads
29057790
Reads aligned (%)
52.5
Duplicates removed (%)
22.1
Number of peaks
10415 (qval < 1E-05)

Base call quality data from DBCLS SRA