SRX096364
GSM790213: EWS502 H3K4me1 ChIP

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Bone
Cell type
EWS502
NA
NA

Attributes by original data submitter

Sample

source_name
Ewing Sarcoma cells
cell line
EWS502
chip antibody
H3K4me1

Sequenced DNA Library

library_name
GSM790213: EWS502_H3K4me1_ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
83848818
Reads aligned (%)
85.4
Duplicates removed (%)
4.1
Number of peaks
93096 (qval < 1E-05)

hg19

Number of total reads
83848818
Reads aligned (%)
85.1
Duplicates removed (%)
4.6
Number of peaks
96689 (qval < 1E-05)

Base call quality data from DBCLS SRA