SRX096360
GSM790209: HUVEC EWS-FLI ChIP

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
Primary endothelial cells
cell line
HUVEC
chip antibody
HA

Sequenced DNA Library

library_name
GSM790209: HUVEC_EWS-FLI_ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
59772565
Reads aligned (%)
87.4
Duplicates removed (%)
8.0
Number of peaks
20540 (qval < 1E-05)

hg19

Number of total reads
59772565
Reads aligned (%)
87.0
Duplicates removed (%)
8.9
Number of peaks
20533 (qval < 1E-05)

Base call quality data from DBCLS SRA