SRX096355
GSM791415: LS180 Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
LS-180
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
cultured CRC cells
antibody
none
cell line
LS180 cells
passages
12-19
treatment
input sample

Sequenced DNA Library

library_name
GSM791415: LS180_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35231535
Reads aligned (%)
84.1
Duplicates removed (%)
16.5
Number of peaks
902 (qval < 1E-05)

hg19

Number of total reads
35231535
Reads aligned (%)
83.1
Duplicates removed (%)
17.7
Number of peaks
1191 (qval < 1E-05)

Base call quality data from DBCLS SRA