SRX096354
GSM791414: LS180 CDX2 125

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CDX2

Cell type

Cell type Class
Digestive tract
Cell type
LS-180
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
cultured CRC cells
antibody
CDX2
cell line
LS180 cells
passages
12-19
treatment
1,25(OH)2D3

Sequenced DNA Library

library_name
GSM791414: LS180_CDX2_125
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
49403112
Reads aligned (%)
93.3
Duplicates removed (%)
66.5
Number of peaks
16443 (qval < 1E-05)

hg19

Number of total reads
49403112
Reads aligned (%)
92.5
Duplicates removed (%)
67.7
Number of peaks
16327 (qval < 1E-05)

Base call quality data from DBCLS SRA