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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CEBPB
wikigenes
PDBj
CellType: LS-180
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX096352
GSM791412: LS180 CEBPb 125
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CEBPB
Cell type
Cell type Class
Digestive tract
Cell type
LS-180
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
cultured CRC cells
antibody
CEBPb
cell line
LS180 cells
passages
12-19
treatment
1,25(OH)2D3
Sequenced DNA Library
library_name
GSM791412: LS180_CEBPb_125
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
50110351
Reads aligned (%)
88.9
Duplicates removed (%)
54.9
Number of peaks
61947 (qval < 1E-05)
hg19
Number of total reads
50110351
Reads aligned (%)
88.4
Duplicates removed (%)
56.1
Number of peaks
61750 (qval < 1E-05)
Base call quality data from
DBCLS SRA