Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CEBPB

Cell type

Cell type Class
Digestive tract
Cell type
LS-180
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
cultured CRC cells
antibody
CEBPb
cell line
LS180 cells
passages
12-19
treatment
1,25(OH)2D3

Sequenced DNA Library

library_name
GSM791412: LS180_CEBPb_125
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
50110351
Reads aligned (%)
38.8
Duplicates removed (%)
56.1
Number of peaks
61750 (qval < 1E-05)

hg38

Number of total reads
50110351
Reads aligned (%)
40.1
Duplicates removed (%)
54.9
Number of peaks
61947 (qval < 1E-05)

Base call quality data from DBCLS SRA