Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CEBPB

Cell type

Cell type Class
Digestive tract
Cell type
LS-180
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
cultured CRC cells
antibody
CEBPb
cell line
LS180 cells
passages
12-19
treatment
vehicle control

Sequenced DNA Library

library_name
GSM791411: LS180_CEBPb_Veh
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
44507597
Reads aligned (%)
38.8
Duplicates removed (%)
56.6
Number of peaks
47115 (qval < 1E-05)

hg38

Number of total reads
44507597
Reads aligned (%)
40.1
Duplicates removed (%)
55.4
Number of peaks
47250 (qval < 1E-05)

Base call quality data from DBCLS SRA