SRX096350
GSM791410: LS180 TCF4 125

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TCF4

Cell type

Cell type Class
Digestive tract
Cell type
LS-180
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
cultured CRC cells
antibody
TCF4
cell line
LS180 cells
passages
12-19
treatment
1,25(OH)2D3

Sequenced DNA Library

library_name
GSM791410: LS180_TCF4_125
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
57119012
Reads aligned (%)
62.4
Duplicates removed (%)
82.0
Number of peaks
2559 (qval < 1E-05)

hg19

Number of total reads
57119012
Reads aligned (%)
61.9
Duplicates removed (%)
83.7
Number of peaks
2641 (qval < 1E-05)

Base call quality data from DBCLS SRA