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Install and launch IGV before selecting data to visualize
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: TCF4
wikigenes
PDBj
CellType: LS-180
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX096349
GSM791409: LS180 TCF4 Veh
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
TCF4
Cell type
Cell type Class
Digestive tract
Cell type
LS-180
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
cultured CRC cells
antibody
TCF4
cell line
LS180 cells
passages
12-19
treatment
vehicle control
Sequenced DNA Library
library_name
GSM791409: LS180_TCF4_Veh
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
54484249
Reads aligned (%)
10.1
Duplicates removed (%)
82.5
Number of peaks
2128 (qval < 1E-05)
hg38
Number of total reads
54484249
Reads aligned (%)
11.1
Duplicates removed (%)
80.8
Number of peaks
1898 (qval < 1E-05)
Base call quality data from
DBCLS SRA