SRX096349
GSM791409: LS180 TCF4 Veh

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TCF4

Cell type

Cell type Class
Digestive tract
Cell type
LS-180
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
cultured CRC cells
antibody
TCF4
cell line
LS180 cells
passages
12-19
treatment
vehicle control

Sequenced DNA Library

library_name
GSM791409: LS180_TCF4_Veh
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
54484249
Reads aligned (%)
10.1
Duplicates removed (%)
82.5
Number of peaks
2128 (qval < 1E-05)

hg38

Number of total reads
54484249
Reads aligned (%)
11.1
Duplicates removed (%)
80.8
Number of peaks
1898 (qval < 1E-05)

Base call quality data from DBCLS SRA