SRX096346
GSM791406: LS180 RXR 125

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RXRA

Cell type

Cell type Class
Digestive tract
Cell type
LS-180
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
cultured CRC cells
antibody
RXR
cell line
LS180 cells
passages
12-19
treatment
1,25(OH)2D3

Sequenced DNA Library

library_name
GSM791406: LS180_RXR_125
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
116187920
Reads aligned (%)
80.8
Duplicates removed (%)
89.2
Number of peaks
4165 (qval < 1E-05)

hg19

Number of total reads
116187920
Reads aligned (%)
80.1
Duplicates removed (%)
90.9
Number of peaks
4134 (qval < 1E-05)

Base call quality data from DBCLS SRA