Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RXRA

Cell type

Cell type Class
Digestive tract
Cell type
LS-180
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
cultured CRC cells
antibody
RXR
cell line
LS180 cells
passages
12-19
treatment
vehicle control

Sequenced DNA Library

library_name
GSM791405: LS180_RXR_Veh
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
77565838
Reads aligned (%)
13.7
Duplicates removed (%)
83.5
Number of peaks
1501 (qval < 1E-05)

hg38

Number of total reads
77565838
Reads aligned (%)
15.3
Duplicates removed (%)
81.8
Number of peaks
1414 (qval < 1E-05)

Base call quality data from DBCLS SRA