SRX096344
GSM791404: LS180 VDR 125

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
VDR

Cell type

Cell type Class
Digestive tract
Cell type
LS-180
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
cultured CRC cells
antibody
VDR
cell line
LS180 cells
passages
12-19
treatment
1,25(OH)2D3

Sequenced DNA Library

library_name
GSM791404: LS180_VDR_125
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
59781351
Reads aligned (%)
95.8
Duplicates removed (%)
74.8
Number of peaks
3977 (qval < 1E-05)

hg38

Number of total reads
59781351
Reads aligned (%)
96.7
Duplicates removed (%)
73.2
Number of peaks
3941 (qval < 1E-05)

Base call quality data from DBCLS SRA