Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
VDR

Cell type

Cell type Class
Digestive tract
Cell type
LS-180
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
cultured CRC cells
antibody
VDR
cell line
LS180 cells
passages
12-19
treatment
vehicle control

Sequenced DNA Library

library_name
GSM791403: LS180_VDR_Veh
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
25766663
Reads aligned (%)
26.4
Duplicates removed (%)
72.1
Number of peaks
406 (qval < 1E-05)

hg38

Number of total reads
25766663
Reads aligned (%)
28.2
Duplicates removed (%)
70.5
Number of peaks
310 (qval < 1E-05)

Base call quality data from DBCLS SRA