SRX095409
GSM717980: LY2 INPUT CONTROL

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
LY2
NA
NA

Attributes by original data submitter

Sample

source_name
Mammary gland epithelial cells, input
cell line
LY2
cell type
mammary gland epithelial cells
treatment
vehicle control
chip antibody
none
read length
30

Sequenced DNA Library

library_name
GSM717980: LY2_INPUT_CONTROL
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12288528
Reads aligned (%)
95.0
Duplicates removed (%)
3.0
Number of peaks
436 (qval < 1E-05)

hg19

Number of total reads
12288528
Reads aligned (%)
93.7
Duplicates removed (%)
5.6
Number of peaks
870 (qval < 1E-05)

Base call quality data from DBCLS SRA