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For hg19
BigWig
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For hg38
BigWig
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Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: MYC
wikigenes
PDBj
CellType: CA46
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX095394
GSM762708: CA46 ChIP
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
MYC
Cell type
Cell type Class
Blood
Cell type
CA46
Primary Tissue
Blood
Tissue Diagnosis
Malignant Lymphoma - Burkitts Type
Attributes by original data submitter
Sample
source_name
CA46
strain
B-cell lymphoma cell line
cell type
B-cell
chip antibody
MYC antibody (N-262 Santa Cruz, CA, USA)
Sequenced DNA Library
library_name
GSM762708: CA46_ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
3005844
Reads aligned (%)
82.5
Duplicates removed (%)
8.1
Number of peaks
911 (qval < 1E-05)
hg38
Number of total reads
3005844
Reads aligned (%)
85.0
Duplicates removed (%)
6.4
Number of peaks
899 (qval < 1E-05)
Base call quality data from
DBCLS SRA