SRX095394
GSM762708: CA46 ChIP

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MYC

Cell type

Cell type Class
Blood
Cell type
CA46
Primary Tissue
Blood
Tissue Diagnosis
Malignant Lymphoma - Burkitts Type

Attributes by original data submitter

Sample

source_name
CA46
strain
B-cell lymphoma cell line
cell type
B-cell
chip antibody
MYC antibody (N-262 Santa Cruz, CA, USA)

Sequenced DNA Library

library_name
GSM762708: CA46_ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
3005844
Reads aligned (%)
82.5
Duplicates removed (%)
8.1
Number of peaks
911 (qval < 1E-05)

hg38

Number of total reads
3005844
Reads aligned (%)
85.0
Duplicates removed (%)
6.4
Number of peaks
899 (qval < 1E-05)

Base call quality data from DBCLS SRA