Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Hela S3 cells
cell line specifics
Hela S3 stably expressing H3.1-FLAG-HA
chip antibody
none

Sequenced DNA Library

library_name
GSM788636: input H3.1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
19198608
Reads aligned (%)
99.0
Duplicates removed (%)
2.4
Number of peaks
520 (qval < 1E-05)

hg19

Number of total reads
19198608
Reads aligned (%)
98.2
Duplicates removed (%)
3.7
Number of peaks
531 (qval < 1E-05)

Base call quality data from DBCLS SRA