Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9ac

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
lab
USC
lab description
Farnham - University of Southern California
datatype
ChipSeq
datatype description
ChIP-Seq
cell
K562
cell organism
human
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype
cancer
cell lineage
mesoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
H3K9acB
antibody antibodydescription
Rabbit polyclonal
antibody targetdescription
Histone H3 (acetyl K9) marks promoters in chromatin regions
antibody vendorname
Millipore
antibody vendorid
07-352
control
UCDavis
control description
Input library was prepared at UC Davis.
control
UCDavis
control description
Input library was prepared at UC Davis.
controlid
wgEncodeEH000672
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM788082: USC_ChipSeq_K562_H3K9acB_UCDavis
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
68487199
Reads aligned (%)
77.6
Duplicates removed (%)
6.6
Number of peaks
33939 (qval < 1E-05)

hg19

Number of total reads
68487199
Reads aligned (%)
77.4
Duplicates removed (%)
6.7
Number of peaks
33966 (qval < 1E-05)

Base call quality data from DBCLS SRA