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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me3
wikigenes
PDBj
CellType: PBMC
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX095370
GSM788075: USC ChipSeq PBMC H3K4me3B UCDavis
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me3
Cell type
Cell type Class
Blood
Cell type
PBMC
Tissue
blood
Lineage
mesoderm
Description
peripheral blood mononuclear cells
Attributes by original data submitter
Sample
source_name
PBMC
biomaterial_provider
PBMC cells provided by E. Bresnick, UW Madison
lab
USC
lab description
Farnham - University of Southern California
datatype
ChipSeq
datatype description
ChIP-Seq
cell
PBMC
cell organism
human
cell description
Peripheral blood mononuclear cells
cell lineage
mesoderm
cell sex
M
treatment
None
treatment description
No special treatment or protocol applies
antibody
H3K4me3B
antibody antibodydescription
Rabbit monoclonal antibody
antibody targetdescription
Histone H3 (tri-methyl K4) marks promoters in chromatin regions
antibody vendorname
Cell Signaling
antibody vendorid
9751S
control
UCDavis
control description
Input library was prepared at UC Davis.
control
UCDavis
control description
Input library was prepared at UC Davis.
controlid
wgEncodeEH001883
replicate
1
replicate description
tier 1
Sequenced DNA Library
library_name
GSM788075: USC_ChipSeq_PBMC_H3K4me3B_UCDavis
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
90199319
Reads aligned (%)
86.8
Duplicates removed (%)
22.9
Number of peaks
22005 (qval < 1E-05)
hg19
Number of total reads
90199319
Reads aligned (%)
86.0
Duplicates removed (%)
24.4
Number of peaks
21947 (qval < 1E-05)
Base call quality data from
DBCLS SRA