ChIP-Atlas: SRX095365

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Input control
Antigen: Input control

Cell type

Cell type Class: Blood
Cell type: PBMC
Tissue: blood
Lineage: mesoderm
Description: peripheral blood mononuclear cells

Attributes by original data submitter

Sample

source_name: PBMC
biomaterial_provider: PBMC cells provided by E. Bresnick, UW Madison
lab: USC
lab description: Farnham - University of Southern California
datatype: ChipSeq
datatype description: ChIP-Seq
cell: PBMC
cell organism: human
cell description: Peripheral blood mononuclear cells
cell lineage: mesoderm
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
antibody: Input
antibody description: Control signal which may be subtracted from experimental raw signal before peaks are called.
control: UCDavis
control description: Input library was prepared at UC Davis.
control: UCDavis
control description: Input library was prepared at UC Davis.
controlid: wgEncodeEH001883
replicate: 1
replicate description: tier 1

Sequenced DNA Library

library_name: GSM788070: USC_ChipSeq_PBMC_Input_UCDavis
library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 89795671
Reads aligned (%): 59.0
Duplicates removed (%): 7.2
Number of peaks: 1145 (qval < 1E-05)

hg19

Number of total reads: 89795671
Reads aligned (%): 58.3
Duplicates removed (%): 8.2
Number of peaks: 1063 (qval < 1E-05)

Base call quality data from DBCLS SRA