Antigen

Antigen Class

TFs and others

Antigen

TCF7L2

Cell type

Cell type Class

Digestive tract

Cell type

HCT 116

Primary Tissue

Colon

Tissue Diagnosis

Carcinoma

Sample

source_name

HCT-116

biomaterial_provider

ATCC

lab

USC

lab description

Farnham - University of Southern California

datatype

ChipSeq

datatype description

ChIP-Seq

cell

HCT-116

cell organism

human

cell description

colorectal carcinoma (PMID: 7214343)

cell karyotype

cancer

cell lineage

endoderm

cell sex

M

treatment

None

treatment description

No special treatment or protocol applies

antibody

TCF7L2

antibody antibodydescription

Rabbit monoclonal

antibody targetdescription

TCF7L2 (formerly known as TCF4) is a member of the high mobility group (HMG) DNA binding protein family of transcription factors which consists of the following: Lymphoid enhancer factor 1 (LEF1), T Cell Factor 1 (TCF1), TCF3 and TCF4

antibody vendorname

Cell Signaling Technology

antibody vendorid

2569S

control

UCDavis

control description

Input library was prepared at UC Davis.

control

UCDavis

control description

Input library was prepared at UC Davis.

controlid

wgEncodeEH000627

labversion

Fragmented using Bioruptor, precipitated with protein G magnetic beads,

replicate

1

replicate description

tier 1

softwareversion

PeakSeq1.0 (fdr 0.001)

Sequenced DNA Library

library_name

GSM782123: USC_ChipSeq_HCT-116_TCF4_UCDavis

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer IIx

hg19

Number of total reads

18906254

Reads aligned (%)

89.2

Duplicates removed (%)

6.1

Number of peaks

26911 (qval < 1E-05)

hg38

Number of total reads

18906254

Reads aligned (%)

90.3

Duplicates removed (%)

5.5

Number of peaks

26921 (qval < 1E-05)