SRX094468
GSM782122: USC ChipSeq HepG2 TCF7L2 UCDavis

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TCF7L2

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HepG2
biomaterial_provider
ATCC
lab
USC
lab description
Farnham - University of Southern California
datatype
ChipSeq
datatype description
ChIP-Seq
cell
HepG2
cell organism
human
cell description
liver carcinoma
cell karyotype
cancer
cell lineage
endoderm
cell sex
M
treatment
None
treatment description
No special treatment or protocol applies
antibody
TCF7L2
antibody antibodydescription
Rabbit monoclonal
antibody targetdescription
TCF7L2 (formerly known as TCF4) is a member of the high mobility group (HMG) DNA binding protein family of transcription factors which consists of the following: Lymphoid enhancer factor 1 (LEF1), T Cell Factor 1 (TCF1), TCF3 and TCF4
antibody vendorname
Cell Signaling Technology
antibody vendorid
2569S
control
UCDavis
control description
Input library was prepared at UC Davis.
control
UCDavis
control description
Input library was prepared at UC Davis.
controlid
wgEncodeEH000674
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM782122: USC_ChipSeq_HepG2_TCF4_UCDavis
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
51715953
Reads aligned (%)
97.0
Duplicates removed (%)
23.5
Number of peaks
3071 (qval < 1E-05)

hg19

Number of total reads
51715953
Reads aligned (%)
96.2
Duplicates removed (%)
24.7
Number of peaks
3140 (qval < 1E-05)

Base call quality data from DBCLS SRA