Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
liver tissue
strain
CD-1
Sex
male
age
7-8 weeks old
chip antibody
normal rabbit IgG
chip antibody vendor
Santa Cruz Biotechnology, Inc

Sequenced DNA Library

library_name
GSM784045: IgG_control
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
14922773
Reads aligned (%)
93.4
Duplicates removed (%)
35.3
Number of peaks
148 (qval < 1E-05)

mm9

Number of total reads
14922773
Reads aligned (%)
93.3
Duplicates removed (%)
35.4
Number of peaks
173 (qval < 1E-05)

Base call quality data from DBCLS SRA