Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TP53

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
normal human lung fibroblasts
cell line
IMR90
pdl
38-40
chip antibody
p53-specific DO1
antibody vendor
Santa Kruz Biotechnology Inc.
catalog number
sc126X [200mg/0.1ml]

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
7473100
Reads aligned (%)
85.8
Duplicates removed (%)
25.4
Number of peaks
340 (qval < 1E-05)

hg19

Number of total reads
7473100
Reads aligned (%)
85.1
Duplicates removed (%)
26.2
Number of peaks
378 (qval < 1E-05)

Base call quality data from DBCLS SRA