SRX093319
GSM783262: p53 ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TP53

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
normal human lung fibroblasts
cell line
IMR90
pdl
38-40
chip antibody
p53-specific DO1
antibody vendor
Santa Kruz Biotechnology Inc.
catalog number
sc126X [200mg/0.1ml]

Sequenced DNA Library

library_name
GSM783262: p53_ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
7473100
Reads aligned (%)
85.8
Duplicates removed (%)
25.4
Number of peaks
340 (qval < 1E-05)

hg19

Number of total reads
7473100
Reads aligned (%)
85.1
Duplicates removed (%)
26.2
Number of peaks
378 (qval < 1E-05)

Base call quality data from DBCLS SRA