SRX093318
GSM783885: anterior trunk input DNA

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic trunk
NA
NA

Attributes by original data submitter

Sample

source_name
Anterior trunk cells
strain
B6CBAF1/J
age
E10.5
cell type
anterior trunk cells
chip antibody
none

Sequenced DNA Library

library_name
GSM783885: anterior trunk input DNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
18202334
Reads aligned (%)
96.4
Duplicates removed (%)
21.5
Number of peaks
550 (qval < 1E-05)

mm9

Number of total reads
18202334
Reads aligned (%)
96.0
Duplicates removed (%)
21.5
Number of peaks
611 (qval < 1E-05)

Base call quality data from DBCLS SRA