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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: G1ME
ATCC
MeSH
RIKEN BRC
SRX092603
GSM777281: G1ME INPUT (GAIIx)
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Blood
Cell type
G1ME
NA
NA
Attributes by original data submitter
Sample
source_name
Megakaryocyte Progenitor Cell Line (G1ME)
cell line
G1ME
Stage
Progenitor, GATA1-null
antibody
none
Sequenced DNA Library
library_name
GSM777281: G1ME_INPUT (GAIIx)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
27350546
Reads aligned (%)
97.0
Duplicates removed (%)
36.3
Number of peaks
519 (qval < 1E-05)
mm9
Number of total reads
27350546
Reads aligned (%)
96.8
Duplicates removed (%)
36.4
Number of peaks
562 (qval < 1E-05)
Base call quality data from
DBCLS SRA