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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me3
wikigenes
PDBj
CellType: CD4+ T cells
ATCC
MeSH
RIKEN BRC
SRX092593
GSM773492: H3K4me3 ChIPSeq Th2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me3
Cell type
Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA
Attributes by original data submitter
Sample
source_name
H3K4me3_ChIPSeq
strain
C57BL/6
tissue
spleen
cell type
primary CD4 T cells
culture condition
Th2
chip antibody
H3K4me3
chip antibody vendor
Lake Placid Biologicals
Sequenced DNA Library
library_name
GSM773492: H3K4me3_ChIPSeq_Th2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
26725176
Reads aligned (%)
90.7
Duplicates removed (%)
35.3
Number of peaks
382 (qval < 1E-05)
mm9
Number of total reads
26725176
Reads aligned (%)
86.4
Duplicates removed (%)
53.8
Number of peaks
490 (qval < 1E-05)
Base call quality data from
DBCLS SRA