SRX092592
GSM773491: H3K4me3 ChIPSeq Th1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
H3K4me3_ChIPSeq
strain
C57BL/6
tissue
spleen
cell type
primary CD4 T cells
culture condition
Th1
chip antibody
H3K4me3
chip antibody vendor
Lake Placid Biologicals

Sequenced DNA Library

library_name
GSM773491: H3K4me3_ChIPSeq_Th1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
23630533
Reads aligned (%)
94.4
Duplicates removed (%)
47.1
Number of peaks
381 (qval < 1E-05)

mm9

Number of total reads
23630533
Reads aligned (%)
93.9
Duplicates removed (%)
60.3
Number of peaks
495 (qval < 1E-05)

Base call quality data from DBCLS SRA