Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K9ac
wikigenes
PDBj
CellType: CD4+ T cells
ATCC
MeSH
RIKEN BRC
SRX092591
GSM773490: H3K9ac ChIPSeq Th2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K9ac
Cell type
Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA
Attributes by original data submitter
Sample
source_name
H3K9ac_ChIPSeq
strain
C57BL/6
tissue
spleen
cell type
primary CD4 T cells
culture condition
Th2
chip antibody
H3K9ac
chip antibody vendor
Upstate
Sequenced DNA Library
library_name
GSM773490: H3K9ac_ChIPSeq_Th2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
17097906
Reads aligned (%)
90.7
Duplicates removed (%)
50.5
Number of peaks
4045 (qval < 1E-05)
mm9
Number of total reads
17097906
Reads aligned (%)
90.6
Duplicates removed (%)
50.6
Number of peaks
4054 (qval < 1E-05)
Base call quality data from
DBCLS SRA