SRX092590
GSM773489: H3K9ac ChIPSeq Th1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9ac

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
H3K9ac_ChIPSeq
strain
C57BL/6
tissue
spleen
cell type
primary CD4 T cells
culture condition
Th1
chip antibody
H3K9ac
chip antibody vendor
Upstate

Sequenced DNA Library

library_name
GSM773489: H3K9ac_ChIPSeq_Th1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
14715943
Reads aligned (%)
90.5
Duplicates removed (%)
79.7
Number of peaks
649 (qval < 1E-05)

mm9

Number of total reads
14715943
Reads aligned (%)
90.5
Duplicates removed (%)
79.8
Number of peaks
658 (qval < 1E-05)

Base call quality data from DBCLS SRA