SRX092582
GSM773481: GATA3 ChIPSeq Th1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Gata3

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
GATA3_ChIPSeq
strain
C57BL/6
tissue
spleen
cell type
primary CD4 T cells
culture condition
Th1
chip antibody
GATA3
chip antibody vendor
Santa Cruz Biotechnology

Sequenced DNA Library

library_name
GSM773481: GATA3_ChIPSeq_Th1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
8259024
Reads aligned (%)
90.6
Duplicates removed (%)
17.6
Number of peaks
373 (qval < 1E-05)

mm9

Number of total reads
8259024
Reads aligned (%)
90.4
Duplicates removed (%)
18.0
Number of peaks
409 (qval < 1E-05)

Base call quality data from DBCLS SRA