SRX092581
GSM773480: control Ab ChIPSeq Th2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
control_Ab_ChIPSeq
strain
C57BL/6
tissue
spleen
cell type
primary CD4 T cells
culture condition
Th2
chip antibody
control_Ab
chip antibody vendor
Southern Biotech

Sequenced DNA Library

library_name
GSM773480: control_Ab_ChIPSeq_Th2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
6055792
Reads aligned (%)
84.5
Duplicates removed (%)
14.0
Number of peaks
389 (qval < 1E-05)

mm9

Number of total reads
6055792
Reads aligned (%)
84.4
Duplicates removed (%)
14.4
Number of peaks
431 (qval < 1E-05)

Base call quality data from DBCLS SRA